Bioops

Bioinformatics=(ACGAAG->AK)+(#!/bin/sh)+(P(A|B)=P(B|A)*P(A)/P(B))

Demo of Classification

Solving Bridge Regression Using Local Quadratic Approximation (LQA)

The Consistent Estimator of Bernouli Distribution

Permutation Test for Principal Component Analysis

Demo of Support Vector Machine

Linear Regression With Cross Validation

Estimate Gamma Distribution Parmaters Using MME and MLE

2015

CFDA Approved BGI’s Next Generation Sequencing Diagnostic Products

Online ‘Statistical Learning’ Course Starts Jan 21 2014

八卦

Lasso Related Links

R Function of Monte Carlo Simulation to Get the P-value From the Joint Cumulative Distribution of an N-dimensional Order Statistic

Simulate Multivariate Normal Distribution Using R

Warning

Final Transfer to Github

Common Job Requirements for Senior/mid-senior Bioinformatician and Computational Biologist

NGS Startups

Sequencing Cost (2013 Feb)

世界末日

Get Intron Sizes From Gff3 Files Using Perl

Painful Experience on Building Local UCSC Genome Browser

关于砖家叫兽和科研创新

Next-generation Sequencing Quality Control Tools

Transfering to Github

[Paper] a Whole-Cell Computational Model Predicts Phenotype From Genotype

Tools for Cross-species Biological Network Comparison

Revolution R Enterprise

posted in r

微博存档05062012-06212012

String-graph Based Next-generation Sequencing Assemblers

Nature: 染色体镶嵌性、年龄和癌症之间的关系

上了火的RNA-seq

真核基因组注释

三种小型测序仪的比较

Wellcome Trust即将推出开放期刊eLife

李恒获得2012年Benjamin Franklin奖

2016年下一代测序技术的全球市场总额将达23.43亿刀

利用Bioperl进行序列输入和输出（Bioperl HOWTO翻译13）

Bioperl入门其他部分（Bioperl HOWTO翻译12）

Bioperl快速检索序列（Bioperl HOWTO翻译11）

[Paper] Efficient De Novo Assembly of Large Genomes Using Compressed Data Structures

[Paper] GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms

[Paper] BGI单细胞基因组测序

新一期Science上有关BGI的通讯

转方向啦

Life Technologies和Illumina竞相发布新测序机器

用Reaver破解WPA加密的WIFI密码

[Paper] De Novo Assembly and Genotyping of Variants Using Colored De Bruijn Graphs

华大基因利用GPU加速基因组数据分析

展望2012超级计算技术

生物信息大牛Eric Lander

Vi编辑器的属性设置

利用Biperl进行本地blast（Bioperl HOWTO翻译10）

利用Bioperl将编码序列翻译成蛋白质（Bioperl HOWTO翻译8）

利用Biperl获取序列基本统计信息（Bioperl HOWTO翻译9）

详解Bioperl的序列对象（Bioperl HOWTO翻译7）

C++ Note 1

Shortcut Cheat Sheet

Perl模拟随机漂变

利用Perl将数据导入excel中

[Paper] Differentiation of the Maize Subgenomes by Genome Dominance and Both Ancient and Ongoing Gene Loss

[Paper] Comparison of Lists of Genes Based on Functional Profiles

[Paper] Assemblathon 1: A Competitive Assessment of De Novo Short Read Assembly Methods

C++ Hello World

[转]传说中的程序猿

[Co-author] ICRISAT-led Global Team Cracks Pigeonpea Genome

[Co-author] Nat. Biotechnol.：木豆基因组破译加速育种发展

Life Is Tough

[转]海归，海不归：留学人员无法回避的两难抉择

使用Perl做频率分布图

使用perl模块迅速得到两数组的子集和并集

Steve Jobs (1955-2011)

BUSY

Mac下类似apt-get和yum的软件——macports

Bioperl输出序列文件（Bioperl HOWTO翻译3）

Bioperl从文件中提取序列（Bioperl HOWTO翻译4）

Bioperl从网络数据库中提取一个序列（Bioperl HOWTO翻译5）

Bioperl从网络数据库中提取多个序列（Bioperl HOWTO翻译6）

Bioperl创建序列对象（Bioperl HOWTO翻译2）

Bioperl 入门（Bioperl HOWTO翻译1）

Next-generation Transcriptome Assembly

Bioperl HOWTOs中文翻译小组招募

perl脚本提取BLAST结果中的信息【以tblastn为例】

做生物信息常用到的linux命令

聪明是天生的么？

Structural Variation Detection by Whole Genome De Novo Assembly

Comparison of De Novo Assembly Tools for Next-generation Sequencing

Hello 点滴记录

Perl多线程

[Paper]A Framework for Variation Discovery and Genotyping Using Next-generation DNA Sequencing Data

[Paper]Full-length Transcriptome Assembly From RNA-Seq Data Without a Reference Genome

[Paper]De Novo Assembly and Analysis of RNA-seq Data

GATK: The Genome Analysis Toolkit

Transfer Protein Alignment to DNA Alignment by Bioperl

KEGG: Kyoto Encyclopedia of Genes and Genomes

InterPro

google.pl - Command Line Google Search in a Shell With Perl

Fedora下配置VNC服务器

MySql常用命令总结

Linux 查看系统信息命令

Notes on Using BLAST

MCL - a Cluster Algorithm for Graphs

MizBee: A Multiscale Synteny Browser

i-ADHoRe: Detect Synteny Regions

Ubuntu下终端路径只显示当前目录

Useful, Essential and Most Often Used Vim Commands

Parse Gff3 File

Shotgun Reads

Scaffold or Supercontig

N50

Contig

Software Packages for Whole Genome Alignment

Software Packages for Discovering Structural Variation With Next-generation Sequencing

Words of Food 几乎所有食物的英文翻译

本地blast

Synteny Relevant Links

Software Packages for Next Generation Sequence Analysis (From seqanswers.com)

Perl: Sorting a Two-Dimensional Array

用perl操作Clustalw进行多序列比对

Windows下用perl操作bl2seq进行两序列比对

Note of Java

Learning Java #1

Just an Ad

Introduction to Using PBS

Data Lost

ABySS: A Parallel Assembler for Short Read Sequence Data